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Nicole de Voogd

Dr. N.J. (Nicole) de Voogd, Senior researcher - Marine Biodiversity

Contact

Email: nicole.devoogd@naturalis.nl
Phone: +31 (0)71 7519615
Room number: C02.09, Darwinweg 2
“The sponge is not, as you suppose a funny kind of weed; he lives below the deep blue sea, an animal like you and me. (A.P. Herbert)”

Career

In 2005 I obtained my PhD degree at the University of Amsterdam on the biodiversity and mariculture potential of Indonesian sponges. Since 2004 I am appointed as a senior researcher at the Department of Marine Zoology where I continue working on sponge taxonomy and ecology and more recently on sponge microbial communities.

Memberships of international scientific boards and editorial boards

  • Member Steering Committee World Register of Marine Species (WoRMS), 2012-present

Activities as editor and/or secretary of books, series and journals

Research

Research interest

During the past five years I have focused on the following main topics: 

  1. Sponge taxonomy
  2. Sponge community composition
  3. Marine lakes
  4. Marine natural products
  5. Sponge microbial communities

Keywords

population genetics, taxonomy, sponge, disturbance, coral reefs, microbes, bioactive compounds

Current research topics


Netbiome POMARE
 Polynesian, Martinique's, Reunion's marine benthic invertebrates: interactions and chemodiversity evaluation for a sustainable use

The objective of the consortium, with all its facilities and expertise, is to explore marine invertebrates and so to act for their protection through chemical ecology studies, and for biotechnological applications through the valorisation of identified compounds and their biological activities. Particular emphasis will be given to sponges and corals, since these are considered most important in coral reef ecosystems and environment. Sponges are also important candidates for the search of bioactive natural products: the project will explore the under-utilized marine natural products as novel pharmaceutical, cosmetic or local-industry products such as pearl farming or for the restoration of some marine invertebrates. Focusing on sessile invertebrates, the aim of the project is to rationalize sampling, field studies and chemical investigations in such a way that the results could be used for interdisciplinary implementation. Our project aims to characterize and preserve biodiversity using sequencing methods and implementation of genomic repositories for its sustainable conservation, but also by setting up efficient synthesis methods to prevent large scale harvesting.

  

Fieldwork at Mayotte together with Dr. Anne Bialecki.

LESS CORAL - The impact of urbanisation on coral reef ecosystems

Here  we assess the historical impact of human settlement on coral reef environments adjacent to two major conurbations in southeast Asia, namely Jakarta and Makassar. This will be the first study to assess on a large spatial scale how the historical process of urbanisation has affected these environments in this marine biodiversity hotspot. With analysis of historical maps, aerial photography and satellite images, in combination with field data, we will provide a general framework for understanding and predicting the effects of human settlement on coral reef communities. A key aspect of the study will be the use of drilling to extract sediment cores that will enable us to study changes in coral composition over long time intervals. This will allow us to document temporal shifts in composition and with the use of historical maps and satellite images relate these shifts to changes in human settlement patterns. Disturbances play a key role in structuring coral assemblages, and are critical determinants of how these assemblages will respond to future pressures and a changing climate. This study will be the first large scale temporal and spatial assessment of megacity impacts on coral reef  environments in an important marine biodiversity hotspot. The results of this study should prove important to conserving coral reef systems and help to reduce the impact of future urbanization. The study will include detailed spatial and temporal information, including GIS, of the historical and present day reef environment of the research areas and will provide valuable background information for coral reef restoration. This study will additionally be important to predict how future estimates of human population density and urbanisation will affect coral reef environments and to identify possible measures that may help to mitigate these effects.

 

Sponge survey at the Spermonde archipelago, SW Sulawesi, Indonesia.

Taxonomic revisions of Indonesian sponges

  • Calcareous sponges of Indonesia -  The taxonomy of calcareous sponges has long suffered from inaccessibility and we present here descriptions of Indonesian calcareous sponges (Rob van Soest & Nicole de Voogd, in prep).
  • Acanthostylotella, the forgotten genus. Affinities of the family Agelasidae (Porifera, Demospongiae, Agelasida): Chemical, molecular and morphological evidence. - Acanthostylotella has been a poorly known and overlooked genus in the recent revision of the phylum Porifera. In this paper we re-evaluate the position of this taxon within the Demospongiae and compare it with superficially similarly looking species. (Nicole de Voogd, Dirk Erpenbeck, John Hooper, Rob van Soest, in prep).

  • On the tubular Poecilosclerid sponges (Porifera: Demospongiae) from Indonesia, with descriptions of Strongylacidon sp. nov. and Mycale sp. nov. - Only four tubular Poecilosclerida sponges are present in Indonesia. In the present paper we present all of these species belonging to 3 different families and 3 different suborders (Ratih Aryasari & Nicole de Voogd, in prep).

Life history influences on range expansion and population connectivity in a widely distributed marine sponge

Population connectivity is a topic of major interest in marine biology with implications for ecology, evolutionary biology, biogeography, conservation and the management of exploited resources. In general, species with a longer pelagic larval duration, will disperse greater distances. Realised dispersal, however, depends on a number of factors including larval life history traits, behaviour and oceanographic conditions, particularly current patterns. Vertical migration behavior can have an important impact on horizontal dispersal, by regulating the time spent by larvae within particular layers of vertically sheared flows. Temporal variation in current patterns is in turn strongly affected by winds, density stratification of the water column and instabilities caused by interaction of currents with bottom topography. The overall objective of the present research proposal will address (in part) this conceptual framework by examining questions related to species performance (reproductive output) population (genetic) structure, and larval dispersal over wide biogeographical scales by using a widely distributed and conspicuous coral reef giant barrel sponge (Xestospongia testudinaria) as a model. Giant barrel sponges are the largest and possibly longest living of sponges and are also important spatial competitors in reef environments and contribute to reef heterogeneity.

Xestospongia testudinaria at Ternate islands, Indonesia.

Collaborations

Collections

The emphasis is on species discovery, revision of  genera, and biogeography, guided by materials collected during many past expeditions and fieldwork trips.

Supervision PhDs

Co-promotor/supervisor

Becking, L.E. (2012) Marine Lakes of Indonesia. Leiden University.

Polonia, A.R.M. (2014) The impact of urbanisation on coral reef ecosystems. University of Porto, Portugal.

Setiawan, E. (2014) Phylogeography of the Indonesian sponges Neopetrosia chaliniformis and Xestospongia testudinaria. Ludwig-Maximilians-University Munich, Germany.

Arysyari, R. Phylogeography of Indonesia sponges. Ludwig-Maximilians-University Munich, Germany.

Teaching

Courses

Coordination Bachelor course University Leiden, Biodiversity in Time and Space

Supervision MSc Students

2013 supervisor- Hauquier, G. - Assessment of the microbial communities for three Indo-Pacific sponges: Xestospongia testudinaria, Stylissa massa and Stylissa carteri.
2013 supervisor - Ent van der, E. - Coral-killing sponges along an environmental disturbance gradient in the Spermonde Archipelago, South-West Sulawesi, Indonesia
2012 Supervisor - Dekker,F. - Phylogeography of the coral overgrowing cyanobcateriosponge Chalinula milnei and associated microbial community
2012 Supervisor - Leeuw, C. de - Population connectivity of the sponge Xestospongia testudinaria in the Spermonde archipelago and the Berau region
2011 Supervisor - Duine, A. - Temporal and spatial differences of fish populations in the Thousand Islands and the Bay of Jakarta, Indonesia
2011 Supervisor - Swierts, T. - Population connectivity and morphological variation of the Giant Barrel Sponge in the Lembeh Strait, Indonesia
2011 Supervisor - Kap, D. - Comparative phylogeography of sponges in Indonesian anchialine lakes
2011 Supervisor - Hörnlein, C. - Phylogeny and phylogeography of Cinachyrella spp. (Porifera: Spirophorida: Tetillidae) in Indonesian waters
2009 Supervisor - Alphen van, J. - Phylogeny and prey specificity of poison-accumulating nudibranch snails (Phyllidiidae) predating on halichondriid sponges
2009 Supervisor - Kang'eri, A.K. - Social shrimp, are they here? Occurence of eusociality in Synalpheus shrimp (Crustacea: Decapoda: Alpehidae) in NE Sulawesi, Indonesia
2009 Supervisor - Santodomingo, N. - Unravelling the moon sponges: On the ecology and phylogeny of the sponges Cinachyrella spp. and Paratetilla spp. (Spirophorida: Tetillidae) in Indonesian anchialine lakes
2008 Supervisor - Jong, M. de, - Which factors determine the abundance of eusocial sponge-dwelling shrimp colonies of the genus Synalpheus (Decapoda, Alpheidae) on coral reefs at Bunaken Marine National Park, North Sulawesi (Indonesia)
2008 Supervisor - Veldhuizen, T. - Endofauna communities of four sponge species from North Sulawesi, Indonesia
2008 Supervisor - Wolf, A. - Phylogenetic relationships among sponge-dwelling snapping shrimps of the genus Synalpheus (Crustacea, Decapoda, Caridea, Alpheidae) in NE Sulawesi, Indonesia: a molecular approach
2006 Supervisor - Jong, M. de - Which factors determine the abundance of eusocial sponge-dwelling shrimp colonies of the genus Synalpheus (Decapoda, Alpheidae) on coral reefs at Bunaken Marine National Park, North Sulawesi (Indonesia)
2006 Supervisor - Veldhuizen, T. - Endofauna communities of four sponge species from North Sulawesi, Indonesia
2006 Supervisor - Wolf, A. - Phylogenetic relationships among sponge-dwelling snapping shrimps of the genus Synalpheus (Crustacea, Decapoda, Caridea, Alpheidae) in NE Sulawesi, Indonesia: a molecular approach
2005 supervisor - Hal van der, N. Presence and diversity of sponge species along the Caribbean coast of Costa Rica.
2002 supervisor - Didderen, K. Crowded canals, 'Qualitative host-use patterns of Caridean shrimp with the historical ecology of the sponge-associated Pontoniine shrimp genera (Crustacea: Decapoda: Pontoniinae)
2002 supervisor - Becking, L.E. - Sponge interactions with spatial competitors
2001 Supervisor - Bavinck, V. - Environmental factors correlated with bioactivity of the sponge Callyspongia
2000 Supervisor - Jansen, A.P.H.M. - The presence of sponge-dwelling endofauna in relation to sponge bioactivity

Supervision BSc Students

2012 Supervisor - Fermont, T. - A revision of the Indo-Pacific Agelas sponges
2011 Supervisor - Wissingh, T. - Endofauna differences between eight Indonesian sponges.
2010 Supervisor - Derogee, D. - Endofauna content of seven marine sponges species from North and Southwest Sulawesi, Indonesia.
Available student projects

Public outreach

Keuringsdienst van waarde 'de Natuurspons' (17-10-2013)

Het klokhuis - 'De spons' (14-02-2004)

The Next wave (National Geographic Television) 'The big squish'2001.

Publications

2017

Journals SCI, peer-reviewed

Polonia A.R.M., Cleary D.F.R., Freitas R., Gomes N.C.M., Voogd N.J.de 2017. Archaeal and bacterial communities of Xestospongia testudinaria and sediment differ in diversity, composition and predicted function in an Indonesian coral reef environment. Netherlands Journal of Sea Research 119: 37-53.
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Issac M., Aknin M., Gauvin-Bialecki A., Voogd N. de, Ledoux A., Frederich M., Kashman Y., Carmeli S. 2017. Cyclotheonellazoles A-C, Potent Protease Inhibitors from the Marine Sponge Theonella aff. swinhoei. Journal of Natural Products 80: 1110-1116.

Helber S.B., Voogd N.J. de , Muhando C.A., Rohde S., Schupp P.J. 2017. Anti-predatory effects of organic extracts of 10 common reef sponges from Zanzibar. Hydrobiologia 790: 247-258.
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Ehrlich H., Bazhenov V.V., Debitus C.,Voogd N.J. de , Galli R., Mikhail V., Tsurkan, Wysokowski M., Meissner H., Bulut E., Kaya M., Jesionowski T. 2017. Isolation and identification of chitin from heavy mineralized skeleton of Suberea clavata (Verongida: Demospongiae: Porifera) marine demosponge. International Journal of Biological Macromolecules: Pending.
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El-Desoky A.H., Kato H., Kagiyama I., Hitora Y., Losung F., Mangidaan R.E.P., Voogd N.J. de, Tsukamoto S. 2017. Ceylonins A-F, Spongian Diterpene Derivatives That Inhibit RANKL-Induced Formation of Multinuclear Osteoclasts, from the Marine Sponge Spongia ceylonensis. Journal of Natural Products 80: 90-95.
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Hirade H., Haruyama T., Kobayashi N., Voogd N.J. de, Tanaka J. 2017. A New Imidazole from the Sponge Dercitus (Halinastra) japonensis. Natural Product Communications 12: 19-20.

An L., Song W.J., Tang X.L., Voogd N.J. de, Wang Q., Chu M.J., Li P.L., Li G.Q. 2017. Alkaloids and polyketides from the South China Sea sponge Agelas aff. nemoechinata. Royal Society Chemistry Advances 7: 14323-14329.
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Campos P.E., Wolfender J.L., Queiroz E.F. Marcourt, L. Al-Mourabit A., Frederich M., Bordignon A., Voogd N.J. de, Illlien B., Gauvin-Bialecki A. 2017. Unguiculin A and Ptilomycalins E-H, Antimalarial Guanidine Alkaloids from the Marine Sponge Monanchora unguiculata. Journal of Natural Products 80: 1404-1410.
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Swierts T., Peijnenburg K.T.C.A., Leeuw C. de, Breeuwer J.A.J., Cleary D.F.R., Voogd N.J. de 2017. Globally intertwined evolutionary history of giant barrel sponges. Coral Reefs 36: 933–945.
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2016

Journals SCI, peer-reviewed

Huang Y.M., Voogd N.J. de, Cleary D.F.R., Li T.T., Mok H.K., Ueng J.P. 2016. Biodiversity pattern of subtidal sponges (Porifera: Demospongiae) in the Penghu Archipelago (Pescadores), Taiwan. Journal of the Marine Biological Association of the United Kingdom 96: 417-427.
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Erpenbeck D., Ekins M., Enghuber N., Hooper J.N.A., Lehnert H., Poliseno A., Schuster A., Setiawan E., Voogd N.J. de., Wörheide G., Soest R.W.M. van 2016. Nothing in (sponge) biology makes sense – except when based on holotypes. Journal of the Marine Biological Association of the United Kingdom 96: 305–311.
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Ent E. van der, Hoeksema B.W., Voogd N.J. de 2016. Abundance and genetic variation of the coral-killing cyanobacteriosponge Terpios hoshinota in the Spermonde Archipelago, SW Sulawesi, Indonesia. Journal of the Marine Biological Association of the United Kingdom 96: 453-463.
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Steinert G., Taylor M.W., Deines P., Simister R.L., Voogd N.J. de, Hoggard P., Schupp P.J. 2016. In four shallow and mesophotic tropical reef sponges from Guam the microbial community largely depends on host identity.. PeerJ 4: e1936.
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Ahmed H.A., El-Desoky A.H., Hikaru K., Mangindaan R.E.P., Voogd N.J. de, Ammar N.M., Hifnawy M.S., Tsukamoto S. 2016. Carteritins A and B, cyclic heptapeptides from the marine sponge Stylissa carteri. Tetrahedron Letters 57: 1285-1288.
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Setiawan E., Voogd N.J. de, Hooper J.N.A., Worheide G., Erpenbeck D. 2016. The lysidyl aminoacyl transfer RNA synthetase intron, a new marker for demosponge phylogeographics – case study on Neopetrosia. Journal of the Marine Biological Association of the United Kingdom 96: 333-339.
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Stoffels B.E.M.W., Meij S.E.T. van der, Hoeksema B.W., Alphen J. van, Alen T. van, Meyers-Muñoz M.A., Voogd N.J. de, Tuti Y., Velde G. van der 2016. Phylogenetic relationships within the Phyllidiidae (Opisthobranchia, Nudibranchia). ZooKeys 605: 1-35.
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Cleary D.F.R., Polónia A.R.M., Renema W., Hoeksema B.W., Rachello-Dolmen P.G., Moolenbeek R.G., Budiyanto A., Yahmantoro, Tuti Y., Giyanto, Draisma S.G.A., Prud'homme van Reine W.F., Hariyanto R., Gittenberger A., Rikoh M.S., de Voogd N.J. 2016. Variation in the composition of corals, fishes, sponges, echinoderms, ascidians, molluscs, foraminifera and macroalgae across a pronounced in-to-offshore environmental gradient in the Jakarta Bay–Thousand Islands coral reef complex. Marine Pollution Bulletin 110: 701-717.
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Setiawan E., Voogd N.J. de, Swierts T., Hooper J.N.A., Worheide G., Erpenbeck D. 2016. MtDNA diversity of the Indonesian giant barrel sponge Xestospongia testudinaria (Porifera: Haplosclerida) – implications from partial cytochrome oxidase 1 sequences. Journal of the Marine Biological Association of the United Kingdom 96: 323-333.
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Becking L.E., Leeuw C. de, Knegt B., Maas D., Voogd, N.J. de, Syatna I., Abdunnur, Peijnenburg K.T.C.A. 2016. Highly divergent mussel lineages in isolated Indonesian marine lakes. PeerJ 4: e2496.
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2015

Journals SCI, peer-reviewed

Polonia A.R.M., Cleary D.F.R., Freitas R., Voogd N.J. de, Gomes N.C.M. 2015. The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment. Molecular Ecology 24: 409-423.
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Ebada S.S., Linh M.H., Longeon A., Voogd N.J. de, Durieu E., Meijer L., Bourquet-Kondracki M.L., Singab A.N.B., Muller W.E.G., Proksch P. 2015. Dispacamide E and other bioactive bromopyrrole alkaloids from two Indonesian marine sponges of the genus Stylissa. Natural Product Research 29: 231-238.
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Voogd N.J. de, Cleary D.F.R., Polónia A.R.M., Gomes N.C.M. 2015. Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand-islands reef complex, West-Java, Indonesia. FEMS Microbiology Ecology 91: fiv019.
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Soest R.W.M. van, Voogd N.J. de 2015. Calcareous sponges of Indonesia. Zootaxa 3951: 1-105.
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Cleary D.F.R, Voogd N.J. de., Polonia A.R.M., Freitas R., Gomes N.C.M. 2015. Composition and predictive functional analysis of bacterial communities in seawater, sediment and sponges in the Spermonde Archipelago, Indonesia. Microbial Ecology 91: 1-12.
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Noda A., Sakai E., Kato H., Losung F., Mangindaan R.E.P., Voogd N.J. de., Yokosawa H., Tsukamoto S. 2015. Strongylophorines, meroditerpenoids from the marine sponge Petrosia corticata, function as proteasome inhibitors. Bioorganic & Medicinal Chemistry Letters 25: 2650-2653.
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Gushiken M., Kagiyama I., Kato H., Kuwana T., Losung F., Mangindaan R.E.P., de Voogd N.J., Tsukamoto, S. 2015. Manadodioxans A2E: polyketide endoperoxides from the marine sponge Plakortis bergquistae. Journal of Natural Medicines 65: 595-600.
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van Soest R.W.M., de Voogd N.J. 2015. Sponge species composition of north-east Atlantic cold-water coral reefs compared in a bathyal to inshore gradient. Journal of the Marine Biological Association of the United Kingdom 95: 1461-1474.
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Soest R.W.M. van, Hoeksema B.W., Reimer J.D., Voogd, N.J. de 2015. New records of the rare calcareous sponge Paragrantia waguensis Hôzawa, 1940. ZooKeys 546: 1-20.
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Polónia A.R.M., Cleary D.F.R., Voogd N.J. de, Renema W., Hoeksema B.W., Martins A., Gomes N.C.M. 2015. Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago. Science of the total Environment 537: 139-151.
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2014

Journals SCI, peer-reviewed

Polonia A.R.M., Cleary D.F.R., Duarte L.N., Voogd N.J. de, Gomes N.C.M. 2014. Composition of Archaea in Seawater, Sediment, and Sponges in the Kepulauan Seribu Reef System, Indonesia. Microbial Ecology 67: 553-567.
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Fung S.-Y., Sofiyev V., Schneiderman J., Hirschfeld A.F., Victor R.E., Woods K., Piotrowski J.S., Deshpande R., Li S.C., Voogd N.J. de, Myers C.L., Boone C., Andersen R.J., Turvey S.E. 2014. Unbiased screening of marine sponge extracts for anti-inflammatory agents combined with chemical genomics identifies girolline as an inhibitor of protein synthesis. ACS Chemical Biology 9: 247-257.
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Daletos G., Voogd N.J. de, Mueller W.E.G., Wray V., Lin W.H., Feger D., Kubbutat M., Aly A.H., Proksch P. 2014. Cytotoxic and Protein Kinase Inhibiting Nakijiquinones and Nakijiquinols from the Sponge Dactylospongia metachromia. Journal of Natural Products 77: 218-226.
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Kudo Y., Kato H., Rotinsulu H., Losung F., Mangindaan R.E.P., Voogd N.J. de, Tsukamoto S. 2014. Aaptoline A, a new quinoline alkaloid from the marine sponge Aaptos suberitoides. Heterocycles 88: 591-594.
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Sakai E., Kato H., Rotinsulu H., Losung F., Mangindaan R.E.P., Voogd N.J. de, Yokosawa H., Tsukamoto S. 2014. Variabines A and B: new beta-carboline alkaloids from the marine sponge Luffariella variabilis. Journal of Natural Medicines 68: 215-219.
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Hoeksema B.W., Dekker F., Voogd N.J. de 2014. Free-living mushroom corals strike back by overtopping a coral-killing sponge. Marine Biodiversity 44: 3-4.
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Cleary D.F.R., Polónia A.R.M., Renema W., Hoeksema B.W., Wolstenholme J., Tuti Y., Voogd N.J. de 2014. Coral reefs next to a major conurbation: a study of temporal change (1985-2011) in coral cover and composition in the reefs of Jakarta, Indonesia. Marine Ecology Progress Series 501: 89-98.
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Hoeksema B.W., Waheed Z., Voogd N.J. de 2014. Partial mortality in corals overgrown by the sponge Terpios hoshinota at Tioman Island, Peninsular Malaysia (South China Sea). Bulletin of Marine Science 90: 989-990.
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Machida K., Abe T., Arai D., Okamoto M., Shimizu I., de Voogd N.J., Fusetani N., Nakao Y. 2014. Cinanthrenol a, an Estrogenic Steroid Containing Phenanthrene Nucleus, from a Marine Sponge Cinachyrella sp. Organic Letters 16: 1539-1541.
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Zhong R., Shao C.L., de Voogd N.J., Wang, C.Y. 2014. Sesquiterpene derivatives and steroids from the sponge Dactylospongia elegans collected from the South China Sea. Chemistry of Natural Compounds 50: 759-761.
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El-Desoky A.H., Kato H., Eguchi K., Kawabata T., Fujiwara Y., Losung F., Mangindaan R.E.P., de Voogd N.J., Takeya M., Yokosawa H., Tsukamoto S. 2014. Acantholactam and Pre-neo-kauluamine, Manzamine-Related Alkaloids from the Indonesian Marine Sponge Acanthostrongylophora ingens. Journal of Natural Products 77: 1536-1540.
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Furusato A., Kato H., Nehira T., Eguchi K., Kawabata T., Fujiwara Y., Losung F., Mangidaan R.E.P., de Voogd N.J., Takeya M., Yokosawa H., Tsukamoto S. 2014. Acanthomanzamines A-E with New Manzamine Frameworks from the Marine Sponge Acanthostrongylophora ingens. Organic Letters 16: 3888-3891.
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Tsukamoto S., Takeuchi T, Kawabata T., Lato H., Yamakuma K.M., El-Desoky A.H., Losung F., Mangidaan R.E.P., Voogd N.J. de, Arata Y., Yokosawa H. 2014. Halenaquinone inhibits RANKL-induced osteoclastogenesis. Bioorganic & Medicinal Chemistry Letters 24: 5315-5318.
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Centko R.M., Steino A., Rosell F.I., Patrick B.O., Voogd N.J. de, Mauk A.G., Andersen R.J. 2014. Indoleamine 2,3-Dioxygenase inhibitors isolated from the sponge Xestospongia vansoesti: structure elucidation, analogue, and biological activity. Organic Letters 16: 6480-6483.
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Journals non-SCI, peer-reviewed

Soest R.W.M. van, Beglinger E.J., Voogd N.J. de 2014. Mycale species (Porifera: Poecilosclerida) of Northwest Africa and the Macaronesian Islands. Zoologische Mededelingen 88: 59-109.

Yamakuma M., Kato H., Matsuo K., El-Desoky A.H., Kawabata T., Losung F., Mangindaan R.E.P., Voogd N.J. de, Yokosawa H., Tsukamoto S. 2014. 1-Hydroxyethylhalenaquinone: a new proteasome inhibitor from the marine sponge Xestospongia. Heterocycles 11: 2605-2610.
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2013

Journals SCI, peer-reviewed

Becking L.E., Cleary D.F.R., Voogd N.J. de 2013. Sponge species composition, abundance, and cover in marine lakes and coastal mangroves in Berau, Indonesia. Marine Ecology Progress Series 481: 105-120.
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Yamaguchi M., Miyazaki M., Kodrasov M.P., Rotinsulu H., Losung F., Mangindaan R.E.P., Voogd N.J. de, Yokosawa H., Nicholson B., Tsukamoto S. 2013. Spongiacidin C, a pyrrole alkaloid from the marine sponge Stylissa massa, functions as a USP7 inhibitor. Bioorganic & Medicinal Chemistry Letters 23: 3884-3886.
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Eguchi K., Fujiwara Y., Hayashida A., Horlad H., Kato H., Rotinsulu H., Losung F., Mangindaan R.E.P., Voogd N.J. de, Takeya M., Tsukamoto S. 2013. Manzamine A, a marine-derived alkaloid, inhibits accumulation of cholesterol ester in macrophages and suppresses hyperlipidemia and atherosclerosis in vivo. Bioorganic & Medicinal Chemistry 21: 3831-3838.
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Voogd N.J. de, Cleary D.F.R., Dekker F. 2013. The coral-killing sponge Terpios hoshinota invades Indonesia. Coral Reefs 32: 755-755.
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Cleary D.F.R., Becking L.E., Voogd N.J. de, Pires A.C.C., Polonia A.R.M., Egas C., Gomes N.C.M. 2013. Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters. FEMS Microbiology Ecology 85: 465-482.
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Zhang J., Tang X., Li J., Li P., Voogd N.J. de, Ni X., Jin X., Yao X., Li P., Li G. 2013. Cytotoxic Polyketide Derivatives from the South China Sea Sponge Plakortis simplex. Journal of Natural Products 76: 600-606.
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Hartmann R., Mueller W.E.G., Voogd N. de, Lai D., Proksch P. 2013. Aaptamine Derivatives from the Indonesian Sponge Aaptos suberitoides. Journal of Natural Products 76: 103-106.
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Mejia E.J., Magranet L.B., Voogd N.J. de, TenDyke K., Qiu D., Shen Y.Y., Zhou Z., Crews P. 2013. Structures and Cytotoxic Evaluation of New and Known Acyclic Ene-Ynes from an American Samoa Petrosia sp Sponge. Journal of Natural Products 76: 425-432.
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Becking L.E., Erpenbeck D., Peijnenburg K.T.C.A., Voogd N.J. de 2013. Phylogeography of the sponge Suberites diversicolor in Indonesia: insights into the evolution of marine lake populations. PLOS ONE 8: e75996.
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Swierts T., Peijnenburg K.T.C.A., Leeuw C. de, Cleary D.F.R., Hornlein C., Setiawan E., Worheide G., Erpenbeck D., Voogd N.J. de 2013. Lock, stock and two different barrels: comparing the genetic composition of morphotypes of the Indo-Pacific sponge Xestospongia testudinaria. PLOS ONE 8: e74396.
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2012

Journals SCI, peer-reviewed

Soest R.W.M. van, Boury-Esnault N., Vacelet J., Dohrmann M., Erpenbeck D., Voogd NJ. de, Santodomingo N., Vanhoorne B., Kelly M., Hooper J.N.A. 2012. Global diversity of sponges (Porifera). PLOS ONE 7: e35105.
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Ushiyama S., Umaoka H., Kato H., Suwa Y., Morioka H., Rotinsulu H., Losung F., Mangindaan R.E.P., Voogd N.J. de, Yokosawa H., Tsukamoto S. 2012. Manadosterols A and B, Sulfonated Sterol Dimers Inhibiting the Ubc13-Uev1A Interaction, Isolated from the Marine Sponge Lissodendryx fibrosa. Journal of Natural Products 75: 1495-1499.
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Wright A.D., Schupp P.J., Schroer J.-P., Engemann A., Rohde Sv., Kelman D., Voogd N.J. de, Carroll A., Motti C.A. 2012. Twilight zone sponges from Guam yield theonellin isocyanate and psammaplysins I and J. Journal of Natural Products 75: 502-506.
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Appeltans W., Ahyong S.T., Anderson G., Angel M.V., Artois T., Bailly N., Bamber R., Barber A., Bartsch I., Berta A., Blazewicz-Paszkowycz M., Bock P., Boxshall G., Boyko C.B., Brandao S.N., Bray R.A., Bruce N.L., Cairns S.D., Chan T.-Y., Cheng L., Collins A.G., Cribb T., Curini-Galletti M., Dahdouh-Guebas F., Davie P.J.F., Dawson M.N., De Clerck O., Decock W., De Grave Sammy, Voogd N.J. de, Domning D.P., Emig C.C., Erseus C., Eschmeyer W., Fauchald K., Fautin D.G., Feist S.W., Fransen C.H.J.M., Furuya H., Garcia-Alvarez O., Gerken S., Gibson D., Gittenberger A., Gofas S., Gomez-Daglio L., Gordon D.P., Guiry M.D., Hernandez F., Hoeksema B.W., Hopcroft R.R., Jaume D., Kirk P., Koedam N., Koenemann S., Kolb J.B., Kristensen R.M., Kroh A., Lambert G., Lazarus D.B., Lemaitre R., Longshaw M., Lowry J., Macpherson E., Madin L.P., Mah C., Mapstone G., McLaughlin P.A., Mees J., Meland K., Messing C.G., Mills C.E., Molodtsova T.N., Mooi R., Neuhaus B., Ng P.K.L., Nielsen C., Norenburg J., Opresko D.M., Osawa M., Paulay G., Perrin W., Pilger J.F., Poore G.C.B., Pugh P., Read G.B., Reimer J.D., Rius M., Rocha R.M., Saiz-Salinas J.I., Scarabino V., Schierwater B., Schmidt-Rhaesa A., Schnabel K.E., Schotte M., Schuchert P., Schwabe E., Segers H., Self-Sullivan C., Shenkar N., Siegel V., Sterrer W., Stohr S., Swalla B., Tasker M.L., Thuesen E.V., Timm T., Todaro M.A., Turon X., Tyler S., Uetz P., Land J. van der, Vanhoorne B., Ofwegen L.P. van, Soest R.W.M. van, Vanaverbeke J., Walker-Smith G., Walter T.C., Warren A., Williams G.C., Wilson S.P., Costello M.J. 2012. The Magnitude of Global Marine Species Diversity. Current Biology 22: 2189-2202.
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Williams D.E., Steino A., Voogd N.J. de, Mauk A.G., Andersen R.J. 2012. Halicloic acids A and B isolated from the marine sponge Haliclona sp. collected in the Philippines inhibit indoleamine 2,3-dioxygenase. Journal of Natural Products 75: 1451-1458.
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Meimetis L.G., Williams D.E., Mawji N.R., Banuelos C.A., Lal A.A., Park J.J., Tien A.H., Fernandez J.G., Voogd N.J. de, Sadar M.D., Andersen R.J. 2012. Niphatenones, glycerol ethers from the sponge Niphates digitalis block androgen receptor transcriptional activity in prostate cancer cells: structure elucidation, synthesis, and biological activity. Journal of Medicinal Chemistry 55: 503-514.
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Yamanokuchi R., Imada K., Miyazaki M., Kato H., Watanabe T., Fujimuro M., Saeki Y., Yoshinaga S., Terasawa H., Iwasaki N., Rotinsulu H., Losung F., Mangindaan R.E.P., Namikoshi M., Voogd N.J. de, Yokosawa H., Tsukamoto S. 2012. Hyrtioreticulins A-E, indole alkaloids inhibiting the ubiquitin-activating enzyme, from the marine sponge Hyrtios reticulatus. Bioorganic & Medicinal Chemistry 20: 4437-4442.
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Fujimoto Y., Salam K.A., Furuta A., Matsuda Y., Fujita O., Tani H., Ikeda M., Kato N., Sakamoto N., Maekawa S., Enomoto N., Voogd N.J. de, Nakakoshi M., Tsubuki M., Sekiguchi Y., Tsuneda S., Akimitsu N., Noda N., Yamashita A., Tanaka J., Moriishi K. 2012. Inhibition of Both Protease and Helicase Activities of Hepatitis C Virus NS3 by an Ethyl Acetate Extract of Marine Sponge Amphimedon sp.. PLOS ONE 7: e48685.
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Li D., Xu Y., Shao C.-L., Yang R.-Y., Zheng C.-J., Chen Y.-Y., Fu X.-M., Qian P.-Y., She Z.-G., Voogd N.J. de, Wang C.-Y. 2012. Antibacterial bisabolane-type sesquiterpenoids from the sponge-derived fungus Aspergillus sp.. Marine Drugs 10: 234-241.
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Li J., Zhu H., Ren J., Deng Z., Voogd N.J. de, Proksch P., Lin W. 2012. Globostelletins J-S, isomalabaricanes with unusual cyclopentane sidechains from the marine sponge Rhabdastrella globostellata. Tetrahedron 68: 559-565.
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Lim S.-C., Voogd N.J. de, Tan K.-S. 2012. Biodiversity of shallow-water sponges (Porifera) in Singapore and description of a new species of Forcepia (Poecilosclerida: Coelosphaeridae). Contributions to Zoology 81: 55-71.

Hoeksema B.W., Voogd N.J. de 2012. On the run: free-living mushroom corals avoiding interaction with sponges. Coral Reefs 31: 455-459.
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Voogd N.J. de 2012. On sand-bearing myxillid sponges, with a description of Psammochela tutiae sp nov (Poecilosclerida, Myxillina) from the northern Moluccas, Indonesia. Zootaxa 3155: 21-28.

Sun L.-L., Shao C.-L., Chen J.-F., Guo Z.-Y., Fu X.-M., Chen M., Chen Y.-Y., Li R., Voogd N.J. de, She Z.-G., Lin Y.-C., Wang C.-Y. 2012. New bisabolane sesquiterpenoids from a marine-derived fungus Aspergillus sp isolated from the sponge Xestospongia testudinaria. Bioorganic & Medicinal Chemistry Letters 22: 1326-1329.
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2011

Journals SCI, peer-reviewed

Hermawan I., Voogd N.J. de, Tanaka J. 2011. An acetylenic alkaloid from the calcareous sponge Leucetta sp.. Marine Drugs 9: 382-386.
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Hoeksema B.W., Land J. van der, Meij S.E.T. van der, Ofwegen L.P. van, Reijnen B.T., Soest R.W.M. van, Voogd N.J. de 2011. Unforeseen importance of historical collections as baselines to determine biotic change of coral reefs: the Saba Bank case. Marine Ecology - An Evolutionary Perspective 32: 135-141.
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Becking L.E., Renema W., Santodomingo N.K., Hoeksema B.W., Tuti Y., Voogd N.J. de 2011. Recently discovered landlocked basins in Indonesia reveal high habitat diversity in anchialine systems. Hydrobiologia 677: 89-105.
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Alphen J. van, Voogd N.J. de, Hoeksema B.W. 2011. Differential feeding strategies in phyllidiid nudibranchs on coral reefs at Halmahera, northern Moluccas. Coral Reefs 30: 59-59.
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Jiang W., Liu D., Deng Z., Voogd N.J. de, Proksch P., Lin W. 2011. Brominated polyunsaturated lipids and their stereochemistry from the Chinese marine sponge Xestospongia testudinaria. Tetrahedron 67: 58-68.
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Erpenbeck D., Weier T., Voogd N.J. de, Woerheide G., Sutcliffe P., Todd J.A., Michel E. 2011. Insights into the evolution of freshwater sponges (Porifera: Demospongiae: Spongillina): Barcoding and phylogenetic data from Lake Tanganyika endemics indicate multiple invasions and unsettle existing taxonomy. Molecular Phylogenetics and Evolution 61: 231-236.
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2010

Journals SCI, peer-reviewed

Daoust J., Fontana A., Merchant C.E., Voogd N.J. de, Patrick B.O., Kieffer T.J., Andersen R.J. 2010. Ansellone A, a sesterterpenoid isolated from the nudibranch Cadlina luteromarginata and the sponge Phorbas sp., activates the cAMP signaling pathway. Organic Letters 12: 3208-3211.
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Li J., Xu B, Cui J., Deng Z., Voogd N.J. de, Proksch P., Lin W. 2010. Globostelletins A-I, cytotoxic isomalabaricane derivatives from the marine sponge Rhabdastrella globostellata. Bioorganic & Medicinal Chemistry 18: 4639-4647.
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Thacker R.W., Cristina D.M., Voogd N.J. de, Soest R.W.M. van, Freeman C.J., Mobley A.S., LaPietra J., Cope K., McKenna S. 2010. Preliminary assessment of sponge biodiversity on Saba Bank, Netherlands Antilles. PLOS ONE 5: e9622.
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Hertiani T., Edrada-Ebel R.A., Ortlepp S., Soest R.W.M. van, Voogd N.J. de, Wray V., Hentschel U., Kozytska S., Mueller W.E.G., Proksch P. 2010. From anti-fouling to biofilm inhibition: New cytotoxic secondary metabolites from two Indonesian Agelas sponges. Bioorganic & Medicinal Chemistry 18: 1297-1311.
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Soest R.W.M. van, Beglinger E.J., Voogd N.J. de 2010. Skeletons in confusion: a review of astrophorid sponges with (dicho-)calthrops as structural megascleres (Porifera, Demospongiae,Astrophorida). ZooKeys 68: 1-88.
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Tsukamoto S., Yamanokuchi R., Yoshitomi M., Sato K., Ikeda T., Rotinsulu H., Mangindaan R.E.P., Voogd N.J. de, Soest R.W.M. van, Yokosawa H. 2010. Aaptamine, an alkaloid from the sponge Aaptos suberitoides, functions as a proteasome inhibitor. Bioorganic & Medicinal Chemistry Letters 20: 3341-3343.
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2009

Journals SCI, peer-reviewed

Voogd N.J. de, Becking L.E., Cleary D.F.R. 2009. Sponge community composition in the Derawan Islands, NE Kalimantan, Indonesia. Marine Ecology Progress Series 396: 169-180.
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Forestier R., Merchant C.E., Voogd N.J. de, Matainaho T., Kieffer T.J., Andersen R.J. 2009. Alotaketals A and B, sesterterpenoids from the marine sponge Hamigera species that activate the cAMP cell signaling pathway. Organic Letters 11: 5166-5169.
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Ebada S., Lin W., Deng Z., Voogd N.J. de, Proksch P. 2009. New jaspamide derivatives from the marine sponge Jaspis sp.. Planta Medica 75: 967-968.

Manzo E., Ciavatta M.L., Melck D., Schupp P., Voogd N.J. de, Gavagnin M. 2009. Aromatic cyclic peroxides and related keto-compounds from the Plakortis sp. component of a sponge consortium. Journal of Natural Products 72: 1547-1551.
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Ebada S.S., Edrada-Ebel R.A., Voogd N.J. de, Wray V., Proksch P. 2009. Dibromopyrrole alkaloids from the marine sponge Acanthostylotella sp.. Natural Product Communications 4: 47-52.

Lim S.-C., Voogd N.J. de, Tan K.-S. 2009. Fouling sponges (Porifera) on navigation buoys from Singapore waters. Raffles Bulletin of Zoology 22: 41-58.

Tianero Ma.D.B., Hanif N., Voogd N.J. de, Soest R.W.A. van, Tanaka J. 2009. A new antimicrobial fatty acid from the calcareous sponge Paragrantia cf. waguensis. Chemistry & Biodiversity 6: 1374-1377.

Voogd N.J. de, Cleary D.F.R. 2009. Variation in sponge composition among singapore reefs. Raffles Bulletin of Zoology 22: 59-67.

Ebada S.S., Wray V., Voogd N.J. de, Deng Z., Lin W., Proksch P. 2009. Two new Jaspamide derivatives from the marine sponge Jaspis splendens. Marine Drugs 7: 435-444.
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Aratake S., Trianto A., Hanif N., Voogd N.J. de, Tanaka J. 2009. A new polyunsaturated brominated fatty acid from a Haliclona sponge. Marine Drugs 7: 523-527.
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2008

Journals SCI, peer-reviewed

Voogd N.J. de, Cleary D.F.R. 2008. An analysis of sponge diversity and distribution at three taxonomic levels in the Thousand Islands/Jakarta Bay reef complex, West-Java, Indonesia. Marine Ecology - An Evolutionary Perspective 29: 205-215.
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Rubio B.K., Robinson S.J., Avalos C.E., Valeriote F.A., Voogd N.J. de, Crews P. 2008. Revisiting the sponge sources, stereostructure, and biological activity of cyclocinamide A. Journal of Natural Products 71: 1475-1478.
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Lv F., Xu M., Deng Z., Voogd N.J. de, Soest R.W.M. van, Proksch P., Lin W. 2008. Rhahdastrellins A-F, Isomalabaricane Triterpenes from the Marine Sponge Rhabdastrella aff. distincta. Journal of Natural Products 71: 1738-1741.
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Ma K., Yang Y., Deng Z., Voogd N.J. de, Proksch P., Lin W. 2008. Two new bromotyrosine derivatives from the marine sponge Pseudoceratina sp.. Chemistry & Biodiversity 5: 1313-1320.

Cleary D.F.R., Vantier L. de, Vail L., Manto P., Voogd N.J. de, Rachello-Dolmen P.G., Tuti Y., Budiyanto A., Wolstenholme J., Hoeksema B.W. 2008. Relating variation in species composition to environmental variables: a multi-taxon study in an Indonesian coral reef complex. Aquatic Sciences 70: 419-431.
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Authored books

Cheng L.S., de Voogd N.J., Siang T.K. 2008. Guide to Sponges in Singapore. 173 p. Science Centre Singapore, ISBN 9789810818807.

2007

Journals SCI, peer-reviewed

Voogd N.J. de, Soest R.W.M. van 2007. Acanthotetilla celebensis sp nov., a new species from North Sulawesi, Indonesia (Porifera : Demospongiae : Spirophorida : Tetillidae). Zootaxa 1397: 25-28.

Salmoun M., Braekman J.C., Dewelle J., Darro F., Kiss R., Voogd N.J. de, Soest R.W.M. van 2007. New terpenoids from two Indonesian marine sponges. Natural Product Research 21: 149-155.
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Hanif N., Tanaka J., Setiawan A., Trianto A., Voogd N.J. de, Murni A., Tanaka C., Higa T. 2007. Polybrominated diphenyl ethers from the Indonesian sponge Lamellodysidea herbacea. Journal of Natural Products 70: 432-435.
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Cleary D.F.R., Voogd N.J. de 2007. Environmental associations of sponges in the Spermonde Archipelago, Indonesia. Journal of the Marine Biological Association of the United Kingdom 87: 1669-1676.
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Voogd N.J. de 2007. An assessment of sponge mariculture potential in the Spermonde Archipelago, Indonesia. Journal of the Marine Biological Association of the United Kingdom 87: 1777-1784.
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Voogd N.J. de, Cleary D.F.R. 2007. Relating species traits to environmental variables in Indonesian coral reef sponge assemblages. Marine and Freshwater Research 58: 240-249.
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Voogd N.J. de 2007. The mariculture potential of the Indonesian reef-dwelling sponge Callyspongia (Euplacella) biru: Growth, survival and bioactive compounds. Aquaculture 262: 54-64.
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Soest R.W.M. van, Kluijver M.J. de, Bragt P.H. van, Faasse M., Nijland R., Beglinger E.J., Weerdt W.H. de, Voogd N.J. de 2007. Sponge invaders in Dutch coastal waters. Journal of the Marine Biological Association of the United Kingdom 87: 1733-1748.
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2006

Journals SCI, peer-reviewed

Voogd N.J. de, Cleary D.F.R., Hoeksema B.W., Noor A., Soest R.W.M. 2006. Sponge beta diversity in the Spermonde Archipelago, SW Sulawesi, Indonesia. Marine Ecology Progress Series 309: 131-142.

Becking L.E., Cleary D.F.R., Voogd N.J. de, Renema W., Beer M. de, Soest R.W.M. van, Hoeksema B.W. 2006. Beta diversity of tropical marine benthic assemblages in the Spermonde Archipelago, Indonesia. Marine Ecology - An Evolutionary Perspective 27: 76-88.
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Didderen K., Fransen C.H.J.M., Voogd N.J. de 2006. Observations on sponge-dwelling colonies of Synalpheus (Decapoda, Alpheidae) of Sulawesi, Indonesia. Crustaceana 79: 961-975.

2005

Journals SCI, peer-reviewed

Voogd N.J. de, Haftka J.J.H., Hoeksema B.W. 2005. Evaluation of the ecological function of amphitoxin in the reef-dwelling sponge Callyspongia (Euplacella) biru (Haplosclerida : Callyspongiidae) at southwest Sulawesi, Indonesia. Contributions to Zoology 74: 51-59.

Cleary D.F.R., Becking L.E., Voogd N.J. de, Renema W., Beer M. de, Soest R.W.M. van, Hoeksema B.W. 2005. Variation in the diversity and composition of benthic taxa as a function of distance offshore, depth and exposure in the Spermonde Archipelago, Indonesia. Estuarine, Coastal and Shelf Science 65: 557-570.
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2004

Journals SCI, peer-reviewed

Genner M.J., Michel E., Erpenbeck D., Voogd N.J. de, Witte F., Pointier J.P. 2004. Camouflaged invasion of Lake Malawi by an Oriental gastropod. Molecular Ecology 13: 2135-2141.
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Journals non-SCI, peer-reviewed

Voogd N.J. de, Becking L.E., Noor A., Hoeksema B.W., Soest R.W.M. van 2004. Sponge interactions with spatial competitors in SW Sulawesi. Bolletino di Museo e Istituto di Biologia dell'Universita di Genova 68: 253-261.

2002

Journals SCI, peer-reviewed

Roy M.C., Tanaka J., Voogd N.J. de, Higa T. 2002. New scalarane class sesterterpenes from an Indonesian sponge, Phyllospongia sp.. Journal of Natural Products 65: 1838-1842.
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1999

Journals non-SCI, peer-reviewed

Voogd N.J. de, Soest R.W.M. van, Hoeksema B.W. 1999. Cross-shelf distribution of SW Sulawesi reef sponges. Memoirs of the Queensland Museum 44: 147-154.

Collections


Nicole_spicules

Sponge spicules.

Nicole_callyspongia

Callyspongia aerizusa covered with Synaptula sea cucumbers near Lembeh island, North Sulawesi.

Nicole_Theonella

Theonella swinhoei near Lembeh island, North Sulawesi.

Nicole_Darwinella

Darwinella aff. gardineri in lake Kakaban, Kalimantan

Callyspongia samarensis growing in shallow waters

Callyspongia samarensis growing in shallow waters in Indonesia

Nicole_chalinula

Chalinula milnei overgrowing corals in SW Sulawesi

Nicole_Haliclona

Haliclona sp. at Mayotte

Nicole_Callyspongia

Callyspongia sp. at the Spermonde archipelago